IL_8QFD_061
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 8QFD|1|5|U|1922, 8QFD|1|5|C|1923, 8QFD|1|5|G|2047, 8QFD|1|5|A|2049
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_061 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.2452
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8QFD|1|5|C|1918
8QFD|1|5|U|1919
8QFD|1|5|C|1920
8QFD|1|5|A|1921
8QFD|1|5|U|1922
8QFD|1|5|C|1923
8QFD|1|5|A|1924
8QFD|1|5|G|1925
*
8QFD|1|5|C|2045
8QFD|1|5|U|2046
8QFD|1|5|G|2047
8QFD|1|5|G|2048
8QFD|1|5|A|2049
8QFD|1|5|G|2050
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- 60S ribosomal protein L13a
- Chain S
- 60S ribosomal protein L18a
- Chain m
- Ubiquitin-60S ribosomal protein L40
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