IL_8QFD_075
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAUC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_075 not in the Motif Atlas
- Homologous match to IL_5TBW_067
- Geometric discrepancy: 0.2265
- The information below is about IL_5TBW_067
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8QFD|1|5|C|2581
8QFD|1|5|G|2582
8QFD|1|5|A|2583
8QFD|1|5|U|2584
8QFD|1|5|C|2585
*
8QFD|1|5|G|2744
8QFD|1|5|G|2745
8QFD|1|5|G|2746
8QFD|1|5|A|2747
8QFD|1|5|G|2748
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain Z
- 60S ribosomal protein L27
- Chain g
- 60S ribosomal protein L34
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