3D structure

PDB id
8QOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SecM-stalled Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
8QOA|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QOA_034 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.0592
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

8QOA|1|A|U|684
8QOA|1|A|G|685
8QOA|1|A|U|686
8QOA|1|A|A|687
8QOA|1|A|G|688
*
8QOA|1|A|C|699
8QOA|1|A|G|700
8QOA|1|A|U|701
8QOA|1|A|A|702
8QOA|1|A|G|703
8QOA|1|A|A|704
8QOA|1|A|G|705
8QOA|1|A|A|706

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
Small ribosomal subunit protein uS11
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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