IL_8QOA_130

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8QOA|1|a|A|1801, 8QOA|1|a|C|1816, 8QOA|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOA_130 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0366

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8QOA|1|a|U|1798
8QOA|1|a|G|1799
8QOA|1|a|C|1800
8QOA|1|a|A|1801
8QOA|1|a|A|1802
8QOA|1|a|A|1803
8QOA|1|a|C|1804
*
8QOA|1|a|G|1813
8QOA|1|a|G|1814
8QOA|1|a|A|1815
8QOA|1|a|C|1816
8QOA|1|a|G|1817
8QOA|1|a|U|1818
8QOA|1|a|A|1819
8QOA|1|a|U|1820
8QOA|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2