IL_8QOI_065
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8QOI|1|L5|A|1637, 8QOI|1|L5|A|1638
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_065 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0779
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8QOI|1|L5|G|1624
8QOI|1|L5|OMG|1625
8QOI|1|L5|G|1626
*
8QOI|1|L5|U|1636
8QOI|1|L5|A|1637
8QOI|1|L5|A|1638
8QOI|1|L5|U|1639
8QOI|1|L5|C|1640
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
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