IL_8QOI_075

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AC(PSU)U*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_075 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2989

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8QOI|1|L5|A|1858
8QOI|1|L5|C|1859
8QOI|1|L5|PSU|1860
8QOI|1|L5|U|1861
*
8QOI|1|L5|A|1873
8QOI|1|L5|A|1874
8QOI|1|L5|C|1875
8QOI|1|L5|U|1876

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LF

Large ribosomal subunit protein uL30

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29