IL_8QOI_163

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

8QOI|1|L5|U|4634

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_163 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.2958

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8QOI|1|L5|U|4632
8QOI|1|L5|G|4633
8QOI|1|L5|U|4634
8QOI|1|L5|A|4635
8QOI|1|L5|PSU|4636
8QOI|1|L5|OMG|4637
8QOI|1|L5|U|4638
*
8QOI|1|L5|G|4661
8QOI|1|L5|C|4662
8QOI|1|L5|G|4663
8QOI|1|L5|A|4664
8QOI|1|L5|A|4665
8QOI|1|L5|G|4666

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31