IL_8QOI_230
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_230 not in the Motif Atlas
- Geometric match to IL_4V88_418
- Geometric discrepancy: 0.0684
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8QOI|1|S2|C|676
8QOI|1|S2|G|677
8QOI|1|S2|U|678
8QOI|1|S2|A|679
8QOI|1|S2|G|680
*
8QOI|1|S2|U|1025
8QOI|1|S2|C|1026
8QOI|1|S2|A|1027
8QOI|1|S2|A|1028
8QOI|1|S2|G|1029
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
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