IL_8QOI_255
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8QOI|1|S2|C|1215, 8QOI|1|S2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_255 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.0801
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
8QOI|1|S2|A|1214
8QOI|1|S2|C|1215
8QOI|1|S2|C|1216
8QOI|1|S2|A|1217
*
8QOI|1|S2|U|1681
8QOI|1|S2|C|1682
8QOI|1|S2|C|1683
8QOI|1|S2|C|1684
8QOI|1|S2|U|1685
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain Sc
- 40S ribosomal protein S28
Coloring options: