IL_8QOI_305

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_305 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0741

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8QOI|1|L5|G|2358
8QOI|1|L5|U|2359
8QOI|1|L5|A|2360
8QOI|1|L5|G|2361
8QOI|1|L5|U|2362
8QOI|1|L5|A2M|2363
8QOI|1|L5|OMG|2364
*
8QOI|1|L5|C|3858
8QOI|1|L5|G|3859
8QOI|1|L5|A|3860
8QOI|1|L5|A|3861
8QOI|1|L5|A|3862
8QOI|1|L5|C|3863

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LP

60S ribosomal protein L17