IL_8QPP_013
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAUUAG*CGACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8QPP|1|A|U|252, 8QPP|1|A|C|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QPP_013 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.2323
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8QPP|1|A|C|250
8QPP|1|A|A|251
8QPP|1|A|U|252
8QPP|1|A|U|253
8QPP|1|A|A|254
8QPP|1|A|G|255
*
8QPP|1|A|C|285
8QPP|1|A|G|286
8QPP|1|A|A|287
8QPP|1|A|C|288
8QPP|1|A|G|289
8QPP|1|A|A|290
8QPP|1|A|U|291
8QPP|1|A|G|292
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
Coloring options: