IL_8QPP_064

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_064 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.1611

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8QPP|1|A|U|1433
8QPP|1|A|A|1434
8QPP|1|A|A|1435
8QPP|1|A|C|1436
*
8QPP|1|A|G|1483
8QPP|1|A|G|1484
8QPP|1|A|G|1485
8QPP|1|A|A|1486

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

Large subunit ribosomal RNA; LSU rRNA

Chain f

50S ribosomal protein L14