IL_8QRK_012
3D structure
- PDB id
- 8QRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.69 Å
Loop
- Sequence
- GCAAU*AC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRK_012 not in the Motif Atlas
- Homologous match to IL_5J7L_018
- Geometric discrepancy: 0.1089
- The information below is about IL_5J7L_018
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_03109.3
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
8QRK|1|A|G|834
8QRK|1|A|C|835
8QRK|1|A|A|836
8QRK|1|A|A|837
8QRK|1|A|U|838
*
8QRK|1|A|A|852
8QRK|1|A|C|853
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain M
- 28S ribosomal protein S16, mitochondrial
- Chain T
- 28S ribosomal protein S25, mitochondrial
- Chain U
- 28S ribosomal protein S26, mitochondrial
Coloring options: