IL_8QRK_049

3D structure

PDB id

8QRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

6.69 Å

Loop

Sequence

G(B8T)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRK_049 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.102

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8QRK|1|A|G|1485
8QRK|1|A|B8T|1486
8QRK|1|A|C|1487
8QRK|1|A|5MC|1488
*
8QRK|1|A|G|1562
8QRK|1|A|U|1563
8QRK|1|A|A|1564
8QRK|1|A|A|1565
8QRK|1|A|C|1566

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain J

28S ribosomal protein S12, mitochondrial