IL_8QRL_028
3D structure
- PDB id
- 8QRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- AUAUC*GCCCU
- Length
- 10 nucleotides
- Bulged bases
- 8QRL|1|A|U|1187, 8QRL|1|A|A|1188, 8QRL|1|A|U|1189
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRL_028 not in the Motif Atlas
- Geometric match to IL_5J7L_291
- Geometric discrepancy: 0.1972
- The information below is about IL_5J7L_291
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
8QRL|1|A|A|1186
8QRL|1|A|U|1187
8QRL|1|A|A|1188
8QRL|1|A|U|1189
8QRL|1|A|C|1190
*
8QRL|1|A|G|1464
8QRL|1|A|C|1465
8QRL|1|A|C|1466
8QRL|1|A|C|1467
8QRL|1|A|U|1468
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 8
- 12S rRNA N4-methylcytidine (m4C) methyltransferase
- Chain F
- 28S ribosomal protein S7, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
Coloring options: