IL_8QRL_037
3D structure
- PDB id
- 8QRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CC*GCUACAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8QRL|1|A|C|1293
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRL_037 not in the Motif Atlas
- Geometric match to IL_8S95_001
- Geometric discrepancy: 0.2235
- The information below is about IL_8S95_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25652.1
- Basepair signature
- cWW-tSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8QRL|1|A|C|1278
8QRL|1|A|C|1279
*
8QRL|1|A|G|1289
8QRL|1|A|C|1290
8QRL|1|A|U|1291
8QRL|1|A|A|1292
8QRL|1|A|C|1293
8QRL|1|A|A|1294
8QRL|1|A|A|1295
8QRL|1|A|A|1296
8QRL|1|A|G|1297
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
- Chain Q
- 28S ribosomal protein S21, mitochondrial
- Chain S
- 28S ribosomal protein S23, mitochondrial
- Chain W
- 28S ribosomal protein S28, mitochondrial
Coloring options: