IL_8QRL_039

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

8QRL|1|A|C|1484, 8QRL|1|A|U|1568

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRL_039 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1113

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8QRL|1|A|C|1483
8QRL|1|A|C|1484
8QRL|1|A|G|1485
*
8QRL|1|A|C|1566
8QRL|1|A|A|1567
8QRL|1|A|U|1568
8QRL|1|A|G|1569

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 8

12S rRNA N4-methylcytidine (m4C) methyltransferase