IL_8QU1_003
3D structure
- PDB id
- 8QU1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- AAAGUAU*AGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QU1_003 not in the Motif Atlas
- Geometric match to IL_5J7L_251
- Geometric discrepancy: 0.1423
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8QU1|1|A|A|1739
8QU1|1|A|A|1740
8QU1|1|A|A|1741
8QU1|1|A|G|1742
8QU1|1|A|U|1743
8QU1|1|A|A|1744
8QU1|1|A|U|1745
*
8QU1|1|A|A|1753
8QU1|1|A|G|1754
8QU1|1|A|A|1755
8QU1|1|A|A|1756
8QU1|1|A|A|1757
8QU1|1|A|U|1758
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain H
- 39S ribosomal protein L9, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain X
- 39S ribosomal protein L28, mitochondrial
Coloring options: