IL_8QU1_010

3D structure

PDB id

8QU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUU*ACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU1_010 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3323

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8QU1|1|A|C|2046
8QU1|1|A|U|2047
8QU1|1|A|U|2048
*
8QU1|1|A|A|2091
8QU1|1|A|C|2092
8QU1|1|A|U|2093
8QU1|1|A|G|2094

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 3

39S ribosomal protein L35, mitochondrial