IL_8QU5_008
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8QU5|1|A|G|2011, 8QU5|1|A|G|2015
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QU5_008 not in the Motif Atlas
- Geometric match to IL_7RQB_018
- Geometric discrepancy: 0.1422
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8QU5|1|A|G|1906
8QU5|1|A|A|1907
8QU5|1|A|A|1908
8QU5|1|A|A|1909
8QU5|1|A|C|1910
*
8QU5|1|A|G|2009
8QU5|1|A|U|2010
8QU5|1|A|G|2011
8QU5|1|A|A|2012
8QU5|1|A|U|2013
8QU5|1|A|A|2014
8QU5|1|A|G|2015
8QU5|1|A|C|2016
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
Coloring options: