IL_8QU5_013
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GUAAA*UGAAC
- Length
- 10 nucleotides
- Bulged bases
- 8QU5|1|A|A|2251
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QU5_013 not in the Motif Atlas
- Homologous match to IL_7RQB_036
- Geometric discrepancy: 0.0708
- The information below is about IL_7RQB_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8QU5|1|A|G|2149
8QU5|1|A|U|2150
8QU5|1|A|A|2151
8QU5|1|A|A|2152
8QU5|1|A|A|2153
*
8QU5|1|A|U|2248
8QU5|1|A|G|2249
8QU5|1|A|A|2250
8QU5|1|A|A|2251
8QU5|1|A|C|2252
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: