IL_8QU5_014

3D structure

PDB id

8QU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU5_014 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.156

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

8QU5|1|A|U|2168
8QU5|1|A|A|2169
8QU5|1|A|G|2170
*
8QU5|1|A|C|2190
8QU5|1|A|A|2191
8QU5|1|A|A|2192

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial