IL_8QU5_015
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GUAG*CACC
- Length
- 8 nucleotides
- Bulged bases
- 8QU5|1|A|A|2172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QU5_015 not in the Motif Atlas
- Homologous match to IL_5J7L_285
- Geometric discrepancy: 0.2662
- The information below is about IL_5J7L_285
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_92446.2
- Basepair signature
- cWW-cWW-R-L-L
- Number of instances in this motif group
- 5
Unit IDs
8QU5|1|A|G|2170
8QU5|1|A|U|2171
8QU5|1|A|A|2172
8QU5|1|A|G|2173
*
8QU5|1|A|C|2187
8QU5|1|A|A|2188
8QU5|1|A|C|2189
8QU5|1|A|C|2190
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 39S ribosomal protein L11, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain l
- 39S ribosomal protein L54, mitochondrial
Coloring options: