IL_8QU5_021

3D structure

PDB id

8QU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU5_021 not in the Motif Atlas

Homologous match to IL_7RQB_066

Geometric discrepancy: 0.1007

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8QU5|1|A|G|2470
8QU5|1|A|G|2471
8QU5|1|A|A|2472
8QU5|1|A|A|2473
*
8QU5|1|A|U|2656
8QU5|1|A|C|2657

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial