IL_8QU5_030
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CCCUGUAC*GGACAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QU5_030 not in the Motif Atlas
- Geometric match to IL_1JBR_001
- Geometric discrepancy: 0.2982
- The information below is about IL_1JBR_001
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8QU5|1|A|C|3119
8QU5|1|A|C|3120
8QU5|1|A|C|3121
8QU5|1|A|U|3122
8QU5|1|A|G|3123
8QU5|1|A|U|3124
8QU5|1|A|A|3125
8QU5|1|A|C|3126
*
8QU5|1|A|G|3131
8QU5|1|A|G|3132
8QU5|1|A|A|3133
8QU5|1|A|C|3134
8QU5|1|A|A|3135
8QU5|1|A|A|3136
8QU5|1|A|G|3137
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain u
- Mitochondrial assembly of ribosomal large subunit protein 1
Coloring options: