IL_8QU5_032

3D structure

PDB id

8QU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UAA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAA,UUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU5_032 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.1468

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8QU5|1|A|U|3174
8QU5|1|A|A|3175
8QU5|1|A|A|3176
*
8QU5|1|A|U|3193
8QU5|1|A|U|3194
8QU5|1|A|A|3195

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain r

39S ribosomal protein S18a, mitochondrial