3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CUCAGUAA*UGAACAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_006 not in the Motif Atlas
Geometric match to IL_1JBR_001
Geometric discrepancy: 0.1232
The information below is about IL_1JBR_001
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8QYX|1|A2|C|81
8QYX|1|A2|U|82
8QYX|1|A2|C|83
8QYX|1|A2|A|84
8QYX|1|A2|G|85
8QYX|1|A2|U|86
8QYX|1|A2|A|87
8QYX|1|A2|A|88
*
8QYX|1|A2|U|96
8QYX|1|A2|G|97
8QYX|1|A2|A|98
8QYX|1|A2|A|99
8QYX|1|A2|C|100
8QYX|1|A2|A|101
8QYX|1|A2|G|102

Current chains

Chain A2
28S rRNA

Nearby chains

Chain F1
60S ribosomal protein L13
Chain H1
60S ribosomal protein L15
Chain K1
60S ribosomal protein L18
Chain U1
Large ribosomal subunit protein uL15

Coloring options:


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