IL_8QYX_006
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_006 not in the Motif Atlas
- Geometric match to IL_1JBR_001
- Geometric discrepancy: 0.1232
- The information below is about IL_1JBR_001
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8QYX|1|A2|C|81
8QYX|1|A2|U|82
8QYX|1|A2|C|83
8QYX|1|A2|A|84
8QYX|1|A2|G|85
8QYX|1|A2|U|86
8QYX|1|A2|A|87
8QYX|1|A2|A|88
*
8QYX|1|A2|U|96
8QYX|1|A2|G|97
8QYX|1|A2|A|98
8QYX|1|A2|A|99
8QYX|1|A2|C|100
8QYX|1|A2|A|101
8QYX|1|A2|G|102
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain F1
- 60S ribosomal protein L13
- Chain H1
- 60S ribosomal protein L15
- Chain K1
- 60S ribosomal protein L18
- Chain U1
- Large ribosomal subunit protein uL15
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