IL_8QYX_007

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8QYX|1|A2|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_007 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2822

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8QYX|1|A2|C|118
8QYX|1|A2|G|119
8QYX|1|A2|A|120
8QYX|1|A2|A|121
*
8QYX|1|A2|U|152
8QYX|1|A2|G|153

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a

Chain H1

60S ribosomal protein L15

Chain b1

60S ribosomal protein L35