IL_8QYX_010
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 8QYX|1|A2|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_010 not in the Motif Atlas
- Geometric match to IL_5TBW_069
- Geometric discrepancy: 0.3838
- The information below is about IL_5TBW_069
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
8QYX|1|A2|C|125
8QYX|1|A2|C|126
*
8QYX|1|A2|G|142
8QYX|1|A2|C|143
8QYX|1|A2|G|144
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain B1
- 60S ribosomal protein L7a
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain H1
- 60S ribosomal protein L15
- Chain R1
- 60S ribosomal protein L23a
- Chain b1
- 60S ribosomal protein L35
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