IL_8QYX_021

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8QYX|1|A2|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_021 not in the Motif Atlas

Geometric match to IL_3MEI_004

Geometric discrepancy: 0.3705

The information below is about IL_3MEI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8QYX|1|A2|G|443
8QYX|1|A2|G|444
8QYX|1|A2|U|445
8QYX|1|A2|C|446
*
8QYX|1|A2|G|1300
8QYX|1|A2|C|1301
8QYX|1|A2|U|1302
8QYX|1|A2|A|1303
8QYX|1|A2|C|1304

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain Y1

60S ribosomal protein L32

Chain Z1

60S ribosomal protein L35a