IL_8QYX_027

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8QYX|1|A2|G|666, 8QYX|1|A2|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_027 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.3531

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8QYX|1|A2|G|487
8QYX|1|A2|G|488
*
8QYX|1|A2|C|665
8QYX|1|A2|G|666
8QYX|1|A2|A|667
8QYX|1|A2|C|668
8QYX|1|A2|C|669

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain k1

60S ribosomal protein L28