IL_8QYX_027
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- GG*CGACC
- Length
- 7 nucleotides
- Bulged bases
- 8QYX|1|A2|G|666, 8QYX|1|A2|A|667
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_027 not in the Motif Atlas
- Geometric match to IL_5ML7_009
- Geometric discrepancy: 0.3531
- The information below is about IL_5ML7_009
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_34520.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 58
Unit IDs
8QYX|1|A2|G|487
8QYX|1|A2|G|488
*
8QYX|1|A2|C|665
8QYX|1|A2|G|666
8QYX|1|A2|A|667
8QYX|1|A2|C|668
8QYX|1|A2|C|669
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain F2
- 60S ribosomal protein L4
- Chain k1
- 60S ribosomal protein L28
Coloring options: