IL_8QYX_029

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UCGGCG*CCCCG

Length

11 nucleotides

Bulged bases

8QYX|1|A2|G|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_029 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3093

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8QYX|1|A2|U|494
8QYX|1|A2|C|495
8QYX|1|A2|G|496
8QYX|1|A2|G|497
8QYX|1|A2|C|498
8QYX|1|A2|G|499
*
8QYX|1|A2|C|655
8QYX|1|A2|C|656
8QYX|1|A2|C|657
8QYX|1|A2|C|658
8QYX|1|A2|G|659

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4