IL_8QYX_038

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8QYX|1|A2|A|1238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_038 not in the Motif Atlas

Geometric match to IL_4R4V_003

Geometric discrepancy: 0.2197

The information below is about IL_4R4V_003

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8QYX|1|A2|G|1073
8QYX|1|A2|G|1074
*
8QYX|1|A2|C|1237
8QYX|1|A2|A|1238
8QYX|1|A2|C|1239

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

60S ribosomal protein L4

Chain H2

60S ribosomal protein L6

Chain V1

60S ribosomal protein L29