IL_8QYX_052
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8QYX|1|A2|A|1650, 8QYX|1|A2|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_052 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0574
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8QYX|1|A2|OMG|1522
8QYX|1|A2|A|1523
8QYX|1|A2|A2M|1524
8QYX|1|A2|A|1525
8QYX|1|A2|G|1526
*
8QYX|1|A2|C|1648
8QYX|1|A2|U|1649
8QYX|1|A2|A|1650
8QYX|1|A2|G|1651
8QYX|1|A2|U|1652
8QYX|1|A2|A|1653
8QYX|1|A2|G|1654
8QYX|1|A2|C|1655
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain H1
- 60S ribosomal protein L15
- Chain U1
- Large ribosomal subunit protein uL15
- Chain d1
- 60S ribosomal protein L37
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