IL_8QYX_058
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8QYX|1|A2|OMG|1625, 8QYX|1|A2|A|1637, 8QYX|1|A2|A|1638, 8QYX|1|A2|U|1639
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_058 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.0789
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8QYX|1|A2|G|1624
8QYX|1|A2|OMG|1625
8QYX|1|A2|G|1626
*
8QYX|1|A2|U|1636
8QYX|1|A2|A|1637
8QYX|1|A2|A|1638
8QYX|1|A2|U|1639
8QYX|1|A2|C|1640
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D2
- Large ribosomal subunit protein uL2
- Chain H1
- 60S ribosomal protein L15
- Chain J1
- 60S ribosomal protein L17
- Chain d1
- 60S ribosomal protein L37
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