IL_8QYX_063

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AA*UU(PSU)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_063 not in the Motif Atlas

Homologous match to IL_8P9A_267

Geometric discrepancy: 0.0601

The information below is about IL_8P9A_267

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8QYX|1|A2|A|1737
8QYX|1|A2|A|1738
*
8QYX|1|A2|U|1790
8QYX|1|A2|U|1791
8QYX|1|A2|PSU|1792

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

Ribosomal protein uL16-like

Chain G2

60S ribosomal protein L5

Chain N1

60S ribosomal protein L21