IL_8QYX_068
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- A(B8T)(PSU)*ACU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8T, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_068 not in the Motif Atlas
- Homologous match to IL_8P9A_274
- Geometric discrepancy: 0.1605
- The information below is about IL_8P9A_274
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8QYX|1|A2|A|1858
8QYX|1|A2|B8T|1859
8QYX|1|A2|PSU|1860
*
8QYX|1|A2|A|1874
8QYX|1|A2|C|1875
8QYX|1|A2|U|1876
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain A1
- Large ribosomal subunit protein uL30
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain N1
- 60S ribosomal protein L21
- Chain V1
- 60S ribosomal protein L29
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