3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
UUAAG*CCAUA
Length
10 nucleotides
Bulged bases
8QYX|1|A2|U|2070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_070 not in the Motif Atlas
Homologous match to IL_8P9A_276
Geometric discrepancy: 0.1008
The information below is about IL_8P9A_276
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_08938.1
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
22

Unit IDs

8QYX|1|A2|U|1905
8QYX|1|A2|U|1906
8QYX|1|A2|A|1907
8QYX|1|A2|A|1908
8QYX|1|A2|G|1909
*
8QYX|1|A2|C|2067
8QYX|1|A2|C|2068
8QYX|1|A2|A|2069
8QYX|1|A2|U|2070
8QYX|1|A2|A|2071

Current chains

Chain A2
28S rRNA

Nearby chains

Chain A1
Large ribosomal subunit protein uL30
Chain B2
5S ribosomal RNA; 5S rRNA
Chain K1
60S ribosomal protein L18
Chain Y1
60S ribosomal protein L32
Chain Z1
60S ribosomal protein L35a

Coloring options:


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