IL_8QYX_076
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8QYX|1|A2|U|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_076 not in the Motif Atlas
- Homologous match to IL_8P9A_281
- Geometric discrepancy: 0.0845
- The information below is about IL_8P9A_281
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
8QYX|1|A2|G|1946
8QYX|1|A2|U|1947
8QYX|1|A2|G|1948
*
8QYX|1|A2|C|2035
8QYX|1|A2|C|2036
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain C1
- 60S ribosomal protein L9
- Chain I1
- 60S ribosomal protein L13a
- Chain M1
- 60S ribosomal protein L18a
- Chain g1
- Large ribosomal subunit protein eL40
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