IL_8QYX_076

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8QYX|1|A2|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_076 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.0845

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8QYX|1|A2|G|1946
8QYX|1|A2|U|1947
8QYX|1|A2|G|1948
*
8QYX|1|A2|C|2035
8QYX|1|A2|C|2036

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain C1

60S ribosomal protein L9

Chain I1

60S ribosomal protein L13a

Chain M1

60S ribosomal protein L18a

Chain g1

Large ribosomal subunit protein eL40