IL_8QYX_086
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8QYX|1|A2|A|2512, 8QYX|1|A2|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_086 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.082
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8QYX|1|A2|C|2446
8QYX|1|A2|U|2447
8QYX|1|A2|G|2448
8QYX|1|A2|A|2449
8QYX|1|A2|G|2450
*
8QYX|1|A2|C|2509
8QYX|1|A2|G|2510
8QYX|1|A2|A|2511
8QYX|1|A2|A|2512
8QYX|1|A2|A|2513
8QYX|1|A2|G|2514
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D2
- Large ribosomal subunit protein uL2
- Chain a1
- 60S ribosomal protein L34
- Chain d1
- 60S ribosomal protein L37
- Chain f1
- 60S ribosomal protein L39
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