3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
8QYX|1|A2|A|2512, 8QYX|1|A2|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_086 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.082
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8QYX|1|A2|C|2446
8QYX|1|A2|U|2447
8QYX|1|A2|G|2448
8QYX|1|A2|A|2449
8QYX|1|A2|G|2450
*
8QYX|1|A2|C|2509
8QYX|1|A2|G|2510
8QYX|1|A2|A|2511
8QYX|1|A2|A|2512
8QYX|1|A2|A|2513
8QYX|1|A2|G|2514

Current chains

Chain A2
28S rRNA

Nearby chains

Chain C2
5.8S ribosomal RNA; 5.8S rRNA
Chain D2
Large ribosomal subunit protein uL2
Chain a1
60S ribosomal protein L34
Chain d1
60S ribosomal protein L37
Chain f1
60S ribosomal protein L39

Coloring options:


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