IL_8QYX_088

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

8QYX|1|A2|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_088 not in the Motif Atlas

Geometric match to IL_8VTW_040

Geometric discrepancy: 0.198

The information below is about IL_8VTW_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12554.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

8QYX|1|A2|G|2542
8QYX|1|A2|A|2543
8QYX|1|A2|G|2544
8QYX|1|A2|U|2545
8QYX|1|A2|G|2546
8QYX|1|A2|G|2547
*
8QYX|1|A2|C|2772
8QYX|1|A2|G|2773
8QYX|1|A2|C|2774

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain e1

60S ribosomal protein L38