IL_8QYX_111

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_111 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1486

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8QYX|1|A2|PSU|3715
8QYX|1|A2|C|3716
8QYX|1|A2|A|3717
8QYX|1|A2|A2M|3718
8QYX|1|A2|A|3719
8QYX|1|A2|G|3720
8QYX|1|A2|U|3721
*
8QYX|1|A2|A|3732
8QYX|1|A2|A|3733
8QYX|1|A2|U|3734
8QYX|1|A2|G|3735
8QYX|1|A2|A|3736
8QYX|1|A2|A|3737
8QYX|1|A2|G|3738

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain c1

60S ribosomal protein L36