IL_8QYX_113

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

8QYX|1|A2|A2M|3785, 8QYX|1|A2|C|3791, 8QYX|1|A2|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_113 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0925

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8QYX|1|A2|C|3781
8QYX|1|A2|5MC|3782
8QYX|1|A2|A|3783
8QYX|1|A2|A|3784
8QYX|1|A2|A2M|3785
8QYX|1|A2|U|3786
8QYX|1|A2|G|3787
8QYX|1|A2|C|3788
8QYX|1|A2|C|3789
8QYX|1|A2|U|3790
8QYX|1|A2|C|3791
8QYX|1|A2|OMG|3792
*
8QYX|1|A2|OMC|3808
8QYX|1|A2|G|3809
8QYX|1|A2|C|3810
8QYX|1|A2|G|3811

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2