IL_8QYX_114

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_114 not in the Motif Atlas

Homologous match to IL_8P9A_319

Geometric discrepancy: 0.0837

The information below is about IL_8P9A_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

8QYX|1|A2|G|3895
8QYX|1|A2|C|3896
8QYX|1|A2|G|3897
8QYX|1|A2|G|3898
*
8QYX|1|A2|U|4563
8QYX|1|A2|A|4564
8QYX|1|A2|C|4565

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain I1

60S ribosomal protein L13a