3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
GCGG*UAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_114 not in the Motif Atlas
Homologous match to IL_8P9A_319
Geometric discrepancy: 0.0837
The information below is about IL_8P9A_319
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_75527.1
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
10

Unit IDs

8QYX|1|A2|G|3895
8QYX|1|A2|C|3896
8QYX|1|A2|G|3897
8QYX|1|A2|G|3898
*
8QYX|1|A2|U|4563
8QYX|1|A2|A|4564
8QYX|1|A2|C|4565

Current chains

Chain A2
28S rRNA

Nearby chains

Chain E2
Large ribosomal subunit protein uL3
Chain I1
60S ribosomal protein L13a

Coloring options:


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