IL_8QYX_127

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8QYX|1|A2|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_127 not in the Motif Atlas

Geometric match to IL_8C3A_422

Geometric discrepancy: 0.3602

The information below is about IL_8C3A_422

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8QYX|1|A2|G|4347
8QYX|1|A2|A|4348
8QYX|1|A2|C|4349
8QYX|1|A2|C|4350
*
8QYX|1|A2|G|4364
8QYX|1|A2|C|4365

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain K1

60S ribosomal protein L18

Chain U1

Large ribosomal subunit protein uL15

Chain i1

60S ribosomal protein L36a