IL_8QYX_134

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

8QYX|1|A2|G|4522, 8QYX|1|A2|A2M|4523

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_134 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.058

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8QYX|1|A2|OMC|4456
8QYX|1|A2|PSU|4457
8QYX|1|A2|C|4458
*
8QYX|1|A2|G|4520
8QYX|1|A2|PSU|4521
8QYX|1|A2|G|4522
8QYX|1|A2|A2M|4523
8QYX|1|A2|G|4524

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain P1

60S ribosomal protein L23