IL_8QYX_139

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_139 not in the Motif Atlas

Homologous match to IL_8P9A_340

Geometric discrepancy: 0.0606

The information below is about IL_8P9A_340

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8QYX|1|A2|G|4495
8QYX|1|A2|A|4496
8QYX|1|A2|U|4497
*
8QYX|1|A2|A|4503
8QYX|1|A2|C|4504
8QYX|1|A2|C|4505

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain P1

60S ribosomal protein L23