IL_8QYX_149

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8QYX|1|A2|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_149 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2309

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8QYX|1|A2|G|4680
8QYX|1|A2|A|4681
8QYX|1|A2|U|4682
8QYX|1|A2|U|4683
8QYX|1|A2|A|4684
8QYX|1|A2|U|4685
*
8QYX|1|A2|A|4705
8QYX|1|A2|G|4706
8QYX|1|A2|A|4707
8QYX|1|A2|A|4708
8QYX|1|A2|U|4709
8QYX|1|A2|C|4710

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain I1

60S ribosomal protein L13a

Chain g1

Large ribosomal subunit protein eL40