IL_8QYX_172
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 8QYX|1|C2|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_172 not in the Motif Atlas
- Homologous match to IL_8P9A_371
- Geometric discrepancy: 0.1466
- The information below is about IL_8P9A_371
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_76400.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8QYX|1|C2|U|64
8QYX|1|C2|A|65
8QYX|1|C2|A|66
*
8QYX|1|C2|U|92
8QYX|1|C2|C|93
8QYX|1|C2|G|94
8QYX|1|C2|A|95
Current chains
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain R1
- 60S ribosomal protein L23a
- Chain S1
- 60S ribosomal protein L26
- Chain b1
- 60S ribosomal protein L35
- Chain d1
- 60S ribosomal protein L37
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