3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
UAA*UCGA
Length
7 nucleotides
Bulged bases
8QYX|1|C2|G|94
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_172 not in the Motif Atlas
Homologous match to IL_8P9A_371
Geometric discrepancy: 0.1466
The information below is about IL_8P9A_371
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_68118.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
27

Unit IDs

8QYX|1|C2|U|64
8QYX|1|C2|A|65
8QYX|1|C2|A|66
*
8QYX|1|C2|U|92
8QYX|1|C2|C|93
8QYX|1|C2|G|94
8QYX|1|C2|A|95

Current chains

Chain C2
5.8S rRNA

Nearby chains

Chain A2
Large subunit ribosomal RNA; LSU rRNA
Chain R1
60S ribosomal protein L23a
Chain S1
60S ribosomal protein L26
Chain b1
60S ribosomal protein L35
Chain d1
60S ribosomal protein L37

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