IL_8R3V_007

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0777

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8R3V|1|72|C|239
8R3V|1|72|C|240
8R3V|1|72|A|241
8R3V|1|72|G|242
8R3V|1|72|U|243
8R3V|1|72|A|244
8R3V|1|72|G|245
*
8R3V|1|72|C|253
8R3V|1|72|G|254
8R3V|1|72|A|255
8R3V|1|72|A|256
8R3V|1|72|C|257
8R3V|1|72|G|258

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35

Chain o2

50S ribosomal protein L15